MAST -- Motif Alignment and Search Tool: Version 3.0

Motif search tool

Data Submission Form

Use this form to submit motifs to MAST to be used in searching a sequence database. Your data will NOT be processed at the San Diego Supercomputer Center, but on SKCC's "Blazingly Fast and Really Cool Linux Cluster," and the results will be sent to you via e-mail.
Your e-mail address: Your motif file:
Sequence database to search:      

Scale motif display threshold by sequence length; recommended for nucleotide searches Description of your motifs:
Use individual sequence composition
in E- and p-value calculation
Display sequences with E-value below:
Text output format Rank of the first match returned:
Ignore motifs if E-value above:

Search nucleotide database with protein motifs Treatment of reverse complement strands:


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